I have 49/50 physical, plus some fraction of a point which prevents me from just spending a level up point to reach level 50. (That's probably a bug as well, since that issue never happened in the flash version.) So I decided to work out at the Ten Ton Gym to get that last point. Currently I have the implant that reduces phys by 5 and increases aim by 10, so my effective phys is 44/45. After I worked out, my phys was no longer 44, but it wasn't 45 either. It had dropped to 40. I doubt this is intentional, since there wasn't any additional message commenting on it. I've attached my save file in case it helps.